IL_9RVC_063

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGA*UAG

Length

7 nucleotides

Bulged bases

9RVC|1|A|G|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RVC_063 not in the Motif Atlas

Geometric match to IL_9DFE_082

Geometric discrepancy: 0.1363

The information below is about IL_9DFE_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.4

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9RVC|1|A|U|1451
9RVC|1|A|G|1452
9RVC|1|A|G|1453
9RVC|1|A|A|1454
*
9RVC|1|A|U|1471
9RVC|1|A|A|1472
9RVC|1|A|G|1473

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20

Chain o

Large ribosomal subunit protein bL19