IL_9RVC_078

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAUACGGAGUUACAAAGGAC*GUCUCUCUUG

Length

31 nucleotides

Bulged bases

9RVC|1|a|U|320, 9RVC|1|a|A|322, 9RVC|1|a|A|329, 9RVC|1|a|U|397, 9RVC|1|a|C|398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RVC|1|a|C|310
9RVC|1|a|U|311
9RVC|1|a|A|312
9RVC|1|a|U|313
9RVC|1|a|A|314
9RVC|1|a|C|315
9RVC|1|a|G|316
9RVC|1|a|G|317
9RVC|1|a|A|318
9RVC|1|a|G|319
9RVC|1|a|U|320
9RVC|1|a|U|321
9RVC|1|a|A|322
9RVC|1|a|C|323
9RVC|1|a|A|324
9RVC|1|a|A|325
9RVC|1|a|A|326
9RVC|1|a|G|327
9RVC|1|a|G|328
9RVC|1|a|A|329
9RVC|1|a|C|330
*
9RVC|1|a|G|396
9RVC|1|a|U|397
9RVC|1|a|C|398
9RVC|1|a|U|399
9RVC|1|a|C|400
9RVC|1|a|U|401
9RVC|1|a|C|402
9RVC|1|a|U|403
9RVC|1|a|U|404
9RVC|1|a|G|405

Current chains

Chain a

23S rRNA

Nearby chains