IL_9RVC_106
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9RVC|1|a|A|1171, 9RVC|1|a|U|1174
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RVC_106 not in the Motif Atlas
- Homologous match to IL_7A0S_037
- Geometric discrepancy: 0.3136
- The information below is about IL_7A0S_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9RVC|1|a|G|1068
9RVC|1|a|G|1069
9RVC|1|a|A|1070
9RVC|1|a|A|1071
9RVC|1|a|A|1072
9RVC|1|a|A|1073
9RVC|1|a|G|1074
*
9RVC|1|a|C|1168
9RVC|1|a|G|1169
9RVC|1|a|A|1170
9RVC|1|a|A|1171
9RVC|1|a|A|1172
9RVC|1|a|A|1173
9RVC|1|a|U|1174
9RVC|1|a|G|1175
9RVC|1|a|U|1176
9RVC|1|a|A|1177
9RVC|1|a|C|1178
9RVC|1|a|C|1179
9RVC|1|a|G|1180
9RVC|1|a|G|1181
9RVC|1|a|G|1182
9RVC|1|a|G|1183
9RVC|1|a|C|1184
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36
- Chain J
- Large ribosomal subunit protein uL13
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain d
- Large ribosomal subunit protein uL3
- Chain l
- Large ribosomal subunit protein uL16
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