IL_9RVC_118

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

9RVC|1|a|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RVC_118 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.1796

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9RVC|1|a|G|1356
9RVC|1|a|G|1357
9RVC|1|a|A|1358
9RVC|1|a|A|1359
9RVC|1|a|G|1360
*
9RVC|1|a|C|1368
9RVC|1|a|G|1369
9RVC|1|a|C|1370

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

Large ribosomal subunit protein uL22

Chain s

Large ribosomal subunit protein uL23