IL_9RVC_123

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGG*CACAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RVC_123 not in the Motif Atlas

Geometric match to IL_4WF9_122

Geometric discrepancy: 0.243

The information below is about IL_4WF9_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67780.1

Basepair signature

cWW-cSH-L-R-L-L-R-L

Number of instances in this motif group

1

Unit IDs

9RVC|1|a|G|1476
9RVC|1|a|U|1477
9RVC|1|a|A|1478
9RVC|1|a|G|1479
9RVC|1|a|G|1480
*
9RVC|1|a|C|1604
9RVC|1|a|A|1605
9RVC|1|a|C|1606
9RVC|1|a|A|1607
9RVC|1|a|C|1608

Current chains

Chain a

23S rRNA

Nearby chains