IL_9RVC_125

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAG*UGAUGG

Length

11 nucleotides

Bulged bases

9RVC|1|a|G|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RVC_125 not in the Motif Atlas

Geometric match to IL_4WF9_116

Geometric discrepancy: 0.1715

The information below is about IL_4WF9_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9RVC|1|a|C|1511
9RVC|1|a|U|1512
9RVC|1|a|A|1513
9RVC|1|a|A|1514
9RVC|1|a|G|1515
*
9RVC|1|a|U|1565
9RVC|1|a|G|1566
9RVC|1|a|A|1567
9RVC|1|a|U|1568
9RVC|1|a|G|1569
9RVC|1|a|G|1570

Current chains

Chain a

23S rRNA

Nearby chains