IL_9RVC_126

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAAG*UGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RVC_126 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.4315

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9RVC|1|a|G|1518
9RVC|1|a|U|1519
9RVC|1|a|A|1520
9RVC|1|a|A|1521
9RVC|1|a|G|1522
*
9RVC|1|a|U|1558
9RVC|1|a|G|1559
9RVC|1|a|A|1560
9RVC|1|a|G|1561
9RVC|1|a|C|1562

Current chains

Chain a

23S rRNA

Nearby chains