IL_9RVC_152

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGUACAGGAUAG*CCUA

Length

17 nucleotides

Bulged bases

9RVC|1|a|U|2138, 9RVC|1|a|A|2139, 9RVC|1|a|C|2140, 9RVC|1|a|A|2141, 9RVC|1|a|A|2144, 9RVC|1|a|U|2145, 9RVC|1|a|U|2207

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RVC|1|a|U|2135
9RVC|1|a|U|2136
9RVC|1|a|G|2137
9RVC|1|a|U|2138
9RVC|1|a|A|2139
9RVC|1|a|C|2140
9RVC|1|a|A|2141
9RVC|1|a|G|2142
9RVC|1|a|G|2143
9RVC|1|a|A|2144
9RVC|1|a|U|2145
9RVC|1|a|A|2146
9RVC|1|a|G|2147
*
9RVC|1|a|C|2205
9RVC|1|a|C|2206
9RVC|1|a|U|2207
9RVC|1|a|A|2208

Current chains

Chain a

23S rRNA

Nearby chains