IL_9RVC_154

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUGGAG*CGCUGGUGGGAUACUACC

Length

25 nucleotides

Bulged bases

9RVC|1|a|G|2148, 9RVC|1|a|G|2152, 9RVC|1|a|A|2153, 9RVC|1|a|C|2190, 9RVC|1|a|U|2191, 9RVC|1|a|U|2194, 9RVC|1|a|U|2199, 9RVC|1|a|A|2200

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RVC|1|a|G|2147
9RVC|1|a|G|2148
9RVC|1|a|U|2149
9RVC|1|a|G|2151
9RVC|1|a|G|2152
9RVC|1|a|A|2153
9RVC|1|a|G|2154
*
9RVC|1|a|C|2188
9RVC|1|a|G|2189
9RVC|1|a|C|2190
9RVC|1|a|U|2191
9RVC|1|a|G|2192
9RVC|1|a|G|2193
9RVC|1|a|U|2194
9RVC|1|a|G|2195
9RVC|1|a|G|2196
9RVC|1|a|G|2197
9RVC|1|a|A|2198
9RVC|1|a|U|2199
9RVC|1|a|A|2200
9RVC|1|a|C|2201
9RVC|1|a|U|2202
9RVC|1|a|A|2203
9RVC|1|a|C|2204
9RVC|1|a|C|2205

Current chains

Chain a

23S rRNA

Nearby chains