IL_9RVC_168

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

9RVC|1|a|A|2599, 9RVC|1|a|C|2600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RVC_168 not in the Motif Atlas

Homologous match to IL_7A0S_090

Geometric discrepancy: 0.1399

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.4

Basepair signature

cWW-cWW

Number of instances in this motif group

22

Unit IDs

9RVC|1|a|C|2539
9RVC|1|a|A|2540
*
9RVC|1|a|U|2598
9RVC|1|a|A|2599
9RVC|1|a|C|2600
9RVC|1|a|G|2601

Current chains

Chain a

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain Y

Transfer RNA; tRNA

Chain d

Large ribosomal subunit protein uL3