IL_9RVC_174

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

9RVC|1|a|U|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RVC_174 not in the Motif Atlas

Homologous match to IL_7A0S_095

Geometric discrepancy: 0.1316

The information below is about IL_7A0S_095

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.14

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9RVC|1|a|C|2707
9RVC|1|a|C|2708
9RVC|1|a|U|2709
9RVC|1|a|C|2710
9RVC|1|a|U|2711
*
9RVC|1|a|A|2752
9RVC|1|a|U|2753
9RVC|1|a|G|2754

Current chains

Chain a

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL14

Chain d

Large ribosomal subunit protein uL3

Chain o

Large ribosomal subunit protein bL19