IL_9RVC_178

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RVC_178 not in the Motif Atlas

Geometric match to IL_9H3G_075

Geometric discrepancy: 0.1444

The information below is about IL_9H3G_075

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9RVC|1|a|A|2817
9RVC|1|a|A|2818
9RVC|1|a|C|2819
*
9RVC|1|a|G|2824
9RVC|1|a|U|2825
9RVC|1|a|U|2826

Current chains

Chain a

23S rRNA

Nearby chains