IL_9RVC_185
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGGUCACA*UUAAGGU
- Length
- 15 nucleotides
- Bulged bases
- 9RVC|1|b|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RVC_185 not in the Motif Atlas
- Geometric match to IL_4WF9_113
- Geometric discrepancy: 0.196
- The information below is about IL_4WF9_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01750.1
- Basepair signature
- cWW-cWW-L-cSW-L-cSW-L-R-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9RVC|1|b|A|20
9RVC|1|b|G|21
9RVC|1|b|G|22
9RVC|1|b|U|23
9RVC|1|b|C|24
9RVC|1|b|A|25
9RVC|1|b|C|26
9RVC|1|b|A|27
*
9RVC|1|b|U|53
9RVC|1|b|U|54
9RVC|1|b|A|55
9RVC|1|b|A|56
9RVC|1|b|G|57
9RVC|1|b|G|58
9RVC|1|b|U|59
Current chains
- Chain b
- 5S
Nearby chains
- Chain f
- Large ribosomal subunit protein uL5
- Chain n
- Large ribosomal subunit protein uL18
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