IL_9S2E_008
3D structure
- PDB id
- 9S2E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human intron-lariat spliceosome-Aquarius (ILSaqr)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CC*GAUG
- Length
- 6 nucleotides
- Bulged bases
- 9S2E|1|6|A|73, 9S2E|1|6|U|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9S2E_008 not in the Motif Atlas
- Geometric match to IL_4WF9_096
- Geometric discrepancy: 0.1674
- The information below is about IL_4WF9_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.4
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
9S2E|1|6|C|61
9S2E|1|6|C|62
*
9S2E|1|6|G|72
9S2E|1|6|A|73
9S2E|1|6|U|74
9S2E|1|6|G|75
Current chains
- Chain 6
- U6 snRNA
Nearby chains
- Chain 2
- U2 splicesomal small nuclear RNA; U2 snRNA
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain IN
- Intron
- Chain J
- Crooked neck-like protein 1
- Chain L2
- CWF19-like protein 2
- Chain R
- SNW domain-containing protein 1
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