IL_9S3B_076

3D structure

PDB id

9S3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9S3B|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S3B_076 not in the Motif Atlas

Homologous match to IL_8GLP_082

Geometric discrepancy: 0.215

The information below is about IL_8GLP_082

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.4

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

5

Unit IDs

9S3B|1|L5|U|1957
9S3B|1|L5|A|1958
9S3B|1|L5|U|1959
9S3B|1|L5|A|1960
9S3B|1|L5|G|1961
9S3B|1|L5|A|1962
9S3B|1|L5|C|1963
9S3B|1|L5|A|1964
9S3B|1|L5|G|1965
*
9S3B|1|L5|C|2022
9S3B|1|L5|C|2023
9S3B|1|L5|G|2024
9S3B|1|L5|A|2025
9S3B|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lm

Ubiquitin-60S ribosomal protein L40

Chain Ls

60S acidic ribosomal protein P0