IL_9S3C_160

3D structure

PDB id

9S3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

9S3C|1|L5|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S3C_160 not in the Motif Atlas

Homologous match to IL_9H3G_143

Geometric discrepancy: 0.1341

The information below is about IL_9H3G_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.4

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9S3C|1|L5|G|5000
9S3C|1|L5|U|5001
9S3C|1|L5|U|5002
*
9S3C|1|L5|G|5045
9S3C|1|L5|U|5046
9S3C|1|L5|C|5047
9S3C|1|L5|A|5048
9S3C|1|L5|G|5049
9S3C|1|L5|C|5050

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Ld

60S ribosomal protein L31