Motif IL_00086.4 Version IL_00086.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8GLP_175 | 8GLP | 0.3185 | 1 | Isolated non-canonical cWW pair (H) | L5 | LSU rRNA | G | 5045 | U | 5046 | C | 5047 | A | 5048 | C | 5050 | * | G | 5000 | PSU | 5001 | U | 5002 | cWW | cwW | cWW |
| 2 | IL_9H3G_143 | 9H3G | 0.0955 | 1 | A | LSU rRNA | U | 3360 | U | 3361 | C | 3362 | A | 3363 | C | 3365 | * | G | 3315 | U | 3316 | A | 3317 | cWW | cwW | cWW | |
| 3 | IL_9PN5_128 | 9PN5 | 0.0000 | 1 | A1 | LSU rRNA | U | 3373 | U | 3374 | A | 3375 | A | 3376 | C | 3378 | * | G | 3328 | U | 3329 | A | 3330 | cWW | cwW | cWW | |
| 4 | IL_9SUM_123 | 9SUM | 0.0483 | 1 | A | LSU rRNA | U | 3261 | U | 3262 | A | 3263 | A | 3264 | C | 3266 | * | G | 3216 | U | 3217 | A | 3218 | cWW | cwW | cWW | |
| 5 | IL_8OI5_129 | 8OI5 | 0.0629 | 1 | 1 | LSU rRNA | U | 3338 | U | 3339 | A | 3340 | A | 3341 | C | 3343 | * | G | 3293 | U | 3294 | A | 3295 | cWW | cwW | cWW | |
| 6 | IL_9AXU_120 | 9AXU | 0.1076 | 1 | 2 | LSU rRNA | U | 3474 | U | 3475 | A | 3476 | A | 3477 | C | 3479 | * | G | 3429 | U | 3430 | A | 3431 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAGC*GUA | 4 |
| GUCAGC*G(PSU)U | 1 |
| UUCAGC*GUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAG*U | 4 |
| UCAG*(PSU) | 1 |
| UCAG*U | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Isolated non-canonical cWW pair (H) (1)
- Basepair signature
- cWW-cWW-L-cWW-L
- Heat map statistics
- Min 0.05 | Avg 0.15 | Max 0.37
Coloring options: