IL_9S3D_084

3D structure

PDB id

9S3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC bound human RNC with 58 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S3D_084 not in the Motif Atlas

Homologous match to IL_8GLP_300

Geometric discrepancy: 0.0351

The information below is about IL_8GLP_300

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9S3D|1|L5|G|2358
9S3D|1|L5|U|2359
9S3D|1|L5|A|2360
9S3D|1|L5|G|2361
9S3D|1|L5|U|2362
9S3D|1|L5|A|2363
9S3D|1|L5|G|2364
*
9S3D|1|L5|C|3858
9S3D|1|L5|G|3859
9S3D|1|L5|A|3860
9S3D|1|L5|A|3861
9S3D|1|L5|A|3862
9S3D|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CZ

nascent chain

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17