IL_9S3D_180

3D structure

PDB id

9S3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC bound human RNC with 58 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S3D_180 not in the Motif Atlas

Geometric match to IL_8GLP_197

Geometric discrepancy: 0.0578

The information below is about IL_8GLP_197

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9S3D|1|S2|U|110
9S3D|1|S2|A|111
9S3D|1|S2|U|112
*
9S3D|1|S2|A|349
9S3D|1|S2|C|350
9S3D|1|S2|G|351

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11