IL_9S7B_073

3D structure

PDB id

9S7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in intermediate state (AP*)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

9S7B|1|AA|C|257, 9S7B|1|AA|C|259, 9S7B|1|AA|A|260

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7B_073 not in the Motif Atlas

Homologous match to IL_8B0X_024

Geometric discrepancy: 0.2433

The information below is about IL_8B0X_024

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9S7B|1|AA|G|240
9S7B|1|AA|U|241
9S7B|1|AA|G|242
9S7B|1|AA|C|243
9S7B|1|AA|C|244
9S7B|1|AA|A|245
9S7B|1|AA|G|246
*
9S7B|1|AA|C|253
9S7B|1|AA|G|254
9S7B|1|AA|G|255
9S7B|1|AA|U|256
9S7B|1|AA|C|257
9S7B|1|AA|A|258
9S7B|1|AA|C|259
9S7B|1|AA|A|260
9S7B|1|AA|C|261

Current chains

Chain AA

Large ribosomal subunit protein mL32

Nearby chains

Chain AD

Small ribosomal subunit protein uS5m

Chain AJ

Small ribosomal subunit protein uS12m

Chain AZ

Small ribosomal subunit protein mS33

Chain Aw

Transfer RNA; tRNA

Chain Az

mRNA (Visualization example)