IL_9S7C_018

3D structure

PDB id

9S7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in initial hybrid state (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAG*CACC

Length

8 nucleotides

Bulged bases

9S7C|1|A|A|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7C_018 not in the Motif Atlas

Homologous match to IL_1MMS_003

Geometric discrepancy: 0.1021

The information below is about IL_1MMS_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9S7C|1|A|G|2170
9S7C|1|A|U|2171
9S7C|1|A|A|2172
9S7C|1|A|G|2173
*
9S7C|1|A|C|2187
9S7C|1|A|A|2188
9S7C|1|A|C|2189
9S7C|1|A|C|2190

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL11m

Chain N

Large ribosomal subunit protein uL16m

Chain l

Large ribosomal subunit protein mL54