IL_9S7C_043

3D structure

PDB id

9S7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in initial hybrid state (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7C_043 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.2287

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

9S7C|1|A|U|2857
9S7C|1|A|A|2858
9S7C|1|A|A|2859
9S7C|1|A|G|2860
*
9S7C|1|A|C|2872
9S7C|1|A|A|2873
9S7C|1|A|A|2874
9S7C|1|A|A|2875

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL35m

Chain 6

Large ribosomal subunit protein mL38

Chain P

Large ribosomal subunit protein uL18m

Chain W

Large ribosomal subunit protein bL27m