IL_9S7C_056

3D structure

PDB id

9S7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in initial hybrid state (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7C_056 not in the Motif Atlas

Geometric match to IL_9AXU_109

Geometric discrepancy: 0.1726

The information below is about IL_9AXU_109

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.5

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9S7C|1|A|C|3119
9S7C|1|A|C|3120
9S7C|1|A|C|3121
9S7C|1|A|U|3122
9S7C|1|A|G|3123
9S7C|1|A|U|3124
9S7C|1|A|A|3125
9S7C|1|A|C|3126
*
9S7C|1|A|G|3131
9S7C|1|A|G|3132
9S7C|1|A|A|3133
9S7C|1|A|C|3134
9S7C|1|A|A|3135
9S7C|1|A|A|3136
9S7C|1|A|G|3137

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains