IL_9S7C_093

3D structure

PDB id

9S7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in initial hybrid state (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

9S7C|1|AA|A|679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7C_093 not in the Motif Atlas

Homologous match to IL_8B0X_048

Geometric discrepancy: 0.1265

The information below is about IL_8B0X_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9S7C|1|AA|C|618
9S7C|1|AA|A|619
*
9S7C|1|AA|U|678
9S7C|1|AA|A|679
9S7C|1|AA|G|680

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS3m

Chain AD

Small ribosomal subunit protein uS5m

Chain AH

Small ribosomal subunit protein uS10m

Chain AK

Small ribosomal subunit protein uS14m

Chain Aw

Transfer RNA; tRNA

Chain Az

mRNA (Visualization example)