IL_9S7D_039

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9S7D|1|A|A|2926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7D_039 not in the Motif Atlas

Homologous match to IL_8B0X_143

Geometric discrepancy: 0.1043

The information below is about IL_8B0X_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

9S7D|1|A|G|2733
9S7D|1|A|A|2734
*
9S7D|1|A|U|2925
9S7D|1|A|A|2926
9S7D|1|A|C|2927
9S7D|1|A|C|2928

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain Av

COX1 nascent chain

Chain Ax

Transfer RNA; tRNA