IL_9S7D_065

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUCAA*UCAAAACG

Length

14 nucleotides

Bulged bases

9S7D|1|AA|U|111, 9S7D|1|AA|A|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7D_065 not in the Motif Atlas

Geometric match to IL_4LFB_011

Geometric discrepancy: 0.1377

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.6

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

7

Unit IDs

9S7D|1|AA|C|109
9S7D|1|AA|A|110
9S7D|1|AA|U|111
9S7D|1|AA|C|112
9S7D|1|AA|A|113
9S7D|1|AA|A|114
*
9S7D|1|AA|U|132
9S7D|1|AA|C|133
9S7D|1|AA|A|134
9S7D|1|AA|A|135
9S7D|1|AA|A|136
9S7D|1|AA|A|137
9S7D|1|AA|C|138
9S7D|1|AA|G|139

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain A3

Small ribosomal subunit protein bS22, mitochondrial

Chain AJ

Small ribosomal subunit protein uS12m

Chain AL

Small ribosomal subunit protein uS15m

Chain AN

Small ribosomal subunit protein uS17m