IL_9S7D_081

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACCC*GC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7D_081 not in the Motif Atlas

Homologous match to IL_8B0X_035

Geometric discrepancy: 0.2303

The information below is about IL_8B0X_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29346.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9S7D|1|AA|G|415
9S7D|1|AA|A|416
9S7D|1|AA|C|417
9S7D|1|AA|C|418
9S7D|1|AA|C|419
*
9S7D|1|AA|G|445
9S7D|1|AA|C|446

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AI

Small ribosomal subunit protein uS11m

Chain D

Large ribosomal subunit protein uL2m