IL_9S7D_082

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7D_082 not in the Motif Atlas

Geometric match to IL_9H3G_204

Geometric discrepancy: 0.1876

The information below is about IL_9H3G_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9S7D|1|AA|A|420
9S7D|1|AA|A|421
9S7D|1|AA|A|422
9S7D|1|AA|C|423
9S7D|1|AA|U|424
*
9S7D|1|AA|A|440
9S7D|1|AA|C|441
9S7D|1|AA|U|442
9S7D|1|AA|A|443
9S7D|1|AA|U|444

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AI

Small ribosomal subunit protein uS11m

Chain AQ

Small ribosomal subunit protein bS21m