IL_9S7E_073

3D structure

PDB id

9S7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

9S7E|1|AA|C|257, 9S7E|1|AA|C|259, 9S7E|1|AA|A|260

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7E_073 not in the Motif Atlas

Homologous match to IL_8B0X_024

Geometric discrepancy: 0.2402

The information below is about IL_8B0X_024

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9S7E|1|AA|G|240
9S7E|1|AA|U|241
9S7E|1|AA|G|242
9S7E|1|AA|C|243
9S7E|1|AA|C|244
9S7E|1|AA|A|245
9S7E|1|AA|G|246
*
9S7E|1|AA|C|253
9S7E|1|AA|G|254
9S7E|1|AA|G|255
9S7E|1|AA|U|256
9S7E|1|AA|C|257
9S7E|1|AA|A|258
9S7E|1|AA|C|259
9S7E|1|AA|A|260
9S7E|1|AA|C|261

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AD

Small ribosomal subunit protein uS5m

Chain AJ

Small ribosomal subunit protein uS12m

Chain AZ

Small ribosomal subunit protein mS33

Chain Aw

Transfer RNA; tRNA

Chain Az

mRNA (Visualization example)