IL_9S7E_092

3D structure

PDB id

9S7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*UCAAG

Length

7 nucleotides

Bulged bases

9S7E|1|AA|C|683, 9S7E|1|AA|A|684

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7E_092 not in the Motif Atlas

Homologous match to IL_8B0X_047

Geometric discrepancy: 0.2168

The information below is about IL_8B0X_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9S7E|1|AA|C|615
9S7E|1|AA|G|616
*
9S7E|1|AA|U|682
9S7E|1|AA|C|683
9S7E|1|AA|A|684
9S7E|1|AA|A|685
9S7E|1|AA|G|686

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS3m

Chain AD

Small ribosomal subunit protein uS5m

Chain AH

Small ribosomal subunit protein uS10m

Chain AK

Small ribosomal subunit protein uS14m

Chain Aw

Transfer RNA; tRNA