IL_9S7E_099

3D structure

PDB id

9S7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(B8T)C(5MC)*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8T, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9S7E_099 not in the Motif Atlas

Homologous match to IL_8B0X_058

Geometric discrepancy: 0.1229

The information below is about IL_8B0X_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9S7E|1|AA|G|838
9S7E|1|AA|B8T|839
9S7E|1|AA|C|840
9S7E|1|AA|5MC|841
*
9S7E|1|AA|G|915
9S7E|1|AA|U|916
9S7E|1|AA|A|917
9S7E|1|AA|A|918
9S7E|1|AA|C|919

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain A3

Small ribosomal subunit protein bS22, mitochondrial

Chain Ax

Transfer RNA; tRNA

Chain Az

mRNA (Visualization example)