IL_9SLG_025

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9SLG|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_025 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1697

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9SLG|1|A|C|569
9SLG|1|A|G|570
9SLG|1|A|U|571
9SLG|1|A|A|572
9SLG|1|A|A|573
9SLG|1|A|A|574
9SLG|1|A|G|575
*
9SLG|1|A|C|880
9SLG|1|A|G|881

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein uS8

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17