IL_9SLG_060

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

9SLG|1|A|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_060 not in the Motif Atlas

Geometric match to IL_8OI5_140

Geometric discrepancy: 0.1866

The information below is about IL_8OI5_140

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9SLG|1|A|5MC|1407
9SLG|1|A|A|1408
9SLG|1|A|C|1409
*
9SLG|1|A|G|1491
9SLG|1|A|A|1492
9SLG|1|A|A|1493
9SLG|1|A|G|1494

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Y

Ribosome-associated inhibitor A

Chain a

Large subunit ribosomal RNA; LSU rRNA