IL_9SLG_081

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9SLG|1|a|G|803, 9SLG|1|a|G|807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_081 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1344

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

9SLG|1|a|G|676
9SLG|1|a|A|677
9SLG|1|a|A|678
9SLG|1|a|A|679
9SLG|1|a|C|680
*
9SLG|1|a|G|801
9SLG|1|a|A|802
9SLG|1|a|G|803
9SLG|1|a|A|804
9SLG|1|a|U|805
9SLG|1|a|A|806
9SLG|1|a|G|807
9SLG|1|a|C|808

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15