IL_9SLG_101

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9SLG|1|a|A|1145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_101 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.3135

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9SLG|1|a|U|1020
9SLG|1|a|U|1021
9SLG|1|a|A|1022
9SLG|1|a|A|1023
9SLG|1|a|G|1024
9SLG|1|a|U|1025
9SLG|1|a|G|1026
*
9SLG|1|a|C|1142
9SLG|1|a|U|1143
9SLG|1|a|A|1144
9SLG|1|a|A|1145
9SLG|1|a|A|1146

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain i

Large ribosomal subunit protein uL13