IL_9SLG_105

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

9SLG|1|a|A|1048

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_105 not in the Motif Atlas

Geometric match to IL_8B0X_104

Geometric discrepancy: 0.1732

The information below is about IL_8B0X_104

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9SLG|1|a|C|1045
9SLG|1|a|C|1046
9SLG|1|a|C|1047
9SLG|1|a|A|1048
9SLG|1|a|G|1049
9SLG|1|a|A|1050
9SLG|1|a|C|1051
9SLG|1|a|A|1052
9SLG|1|a|G|1053
*
9SLG|1|a|U|1110
9SLG|1|a|C|1111
9SLG|1|a|G|1112
9SLG|1|a|A|1113
9SLG|1|a|G|1114

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain g

Large ribosomal subunit protein uL6