IL_9SLG_106

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

9SLG|1|a|U|1063

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_106 not in the Motif Atlas

Homologous match to IL_1MMS_003

Geometric discrepancy: 0.3909

The information below is about IL_1MMS_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9SLG|1|a|G|1061
9SLG|1|a|U|1062
9SLG|1|a|U|1063
9SLG|1|a|G|1064
*
9SLG|1|a|C|1078
9SLG|1|a|A|1079
9SLG|1|a|U|1080
9SLG|1|a|C|1081

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain l

Large ribosomal subunit protein uL16