IL_9SLG_118

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

9SLG|1|a|U|1561

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_118 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.0747

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9SLG|1|a|G|1434
9SLG|1|a|A|1435
9SLG|1|a|A|1436
9SLG|1|a|G|1437
*
9SLG|1|a|C|1559
9SLG|1|a|C|1560
9SLG|1|a|U|1561
9SLG|1|a|G|1562
9SLG|1|a|C|1563

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2