IL_8B0X_115

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

8B0X|1|a|U|1561

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B0X_115 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.0751

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8B0X|1|a|G|1434
8B0X|1|a|A|1435
8B0X|1|a|A|1436
8B0X|1|a|G|1437
*
8B0X|1|a|C|1559
8B0X|1|a|C|1560
8B0X|1|a|U|1561
8B0X|1|a|G|1562
8B0X|1|a|C|1563

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2