IL_9SLG_119

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

9SLG|1|a|U|1556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_119 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.1729

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9SLG|1|a|C|1439
9SLG|1|a|U|1440
9SLG|1|a|A|1441
9SLG|1|a|U|1442
*
9SLG|1|a|A|1553
9SLG|1|a|A|1554
9SLG|1|a|A|1555
9SLG|1|a|U|1556
9SLG|1|a|G|1557

Current chains

Chain a

23S ribosomal RNA

Nearby chains