IL_9SLG_132

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9SLG|1|a|U|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_132 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0481

The information below is about IL_8B0X_128

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9SLG|1|a|U|1714
9SLG|1|a|A|1715
9SLG|1|a|U|1716
9SLG|1|a|G|1717
9SLG|1|a|U|1718
9SLG|1|a|A|1719
9SLG|1|a|G|1720
*
9SLG|1|a|U|1744
9SLG|1|a|G|1745
9SLG|1|a|A|1746
9SLG|1|a|A|1747
9SLG|1|a|A|1748

Current chains

Chain a

23S ribosomal RNA

Nearby chains