IL_9SLG_133

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_133 not in the Motif Atlas

Geometric match to IL_8B0X_129

Geometric discrepancy: 0.0947

The information below is about IL_8B0X_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70744.1

Basepair signature

cWW-tSH-tHS-L-R-cWW

Number of instances in this motif group

2

Unit IDs

9SLG|1|a|U|1722
9SLG|1|a|G|1723
9SLG|1|a|A|1724
9SLG|1|a|G|1725
9SLG|1|a|G|1726
*
9SLG|1|a|U|1738
9SLG|1|a|G|1739
9SLG|1|a|G|1740
9SLG|1|a|A|1741
9SLG|1|a|G|1742

Current chains

Chain a

23S ribosomal RNA

Nearby chains