IL_9SLG_136
3D structure
- PDB id
- 9SLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 9SLG|1|a|A|1803, 9SLG|1|a|C|1818, 9SLG|1|a|U|1822
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SLG_136 not in the Motif Atlas
- Homologous match to IL_7A0S_065
- Geometric discrepancy: 0.1121
- The information below is about IL_7A0S_065
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9SLG|1|a|U|1800
9SLG|1|a|G|1801
9SLG|1|a|C|1802
9SLG|1|a|A|1803
9SLG|1|a|A|1804
9SLG|1|a|A|1805
9SLG|1|a|C|1806
*
9SLG|1|a|G|1815
9SLG|1|a|G|1816
9SLG|1|a|A|1817
9SLG|1|a|C|1818
9SLG|1|a|G|1819
9SLG|1|a|U|1820
9SLG|1|a|A|1821
9SLG|1|a|U|1822
9SLG|1|a|A|1823
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: