IL_9SLG_145

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9SLG|1|a|C|2059, 9SLG|1|a|U|2617, 9SLG|1|a|A|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_145 not in the Motif Atlas

Geometric match to IL_4WF9_079

Geometric discrepancy: 0.1678

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

9

Unit IDs

9SLG|1|a|A|2058
9SLG|1|a|C|2059
9SLG|1|a|G|2060
*
9SLG|1|a|C|2616
9SLG|1|a|U|2617
9SLG|1|a|A|2618
9SLG|1|a|U|2619

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32