IL_9SLG_146

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

ACC*GGA(H2U)

Length

7 nucleotides

Bulged bases

9SLG|1|a|C|2067, 9SLG|1|a|A|2452

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_146 not in the Motif Atlas

Geometric match to IL_7OAX_001

Geometric discrepancy: 0.3679

The information below is about IL_7OAX_001

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9SLG|1|a|A|2066
9SLG|1|a|C|2067
9SLG|1|a|C|2068
*
9SLG|1|a|G|2450
9SLG|1|a|G|2451
9SLG|1|a|A|2452
9SLG|1|a|H2U|2453

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15