IL_9SLG_153

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_153 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.2079

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

9SLG|1|a|G|2114
9SLG|1|a|U|2115
9SLG|1|a|G|2116
9SLG|1|a|U|2117
9SLG|1|a|A|2118
9SLG|1|a|G|2119
9SLG|1|a|G|2120
9SLG|1|a|A|2121
9SLG|1|a|U|2122
9SLG|1|a|A|2123
9SLG|1|a|G|2124
*
9SLG|1|a|C|2182
9SLG|1|a|C|2183

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein uL1