IL_9SLG_154

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GGAG*CGGCCUUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_154 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.1241

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9SLG|1|a|G|2128
9SLG|1|a|G|2129
9SLG|1|a|A|2130
9SLG|1|a|G|2131
*
9SLG|1|a|C|2165
9SLG|1|a|G|2166
9SLG|1|a|G|2167
9SLG|1|a|C|2168
9SLG|1|a|C|2169
9SLG|1|a|U|2170
9SLG|1|a|U|2171
9SLG|1|a|G|2172
9SLG|1|a|A|2173
9SLG|1|a|A|2174
9SLG|1|a|A|2175
9SLG|1|a|U|2176
9SLG|1|a|A|2177
9SLG|1|a|C|2178

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein uL1