IL_9SLG_155

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9SLG|1|a|U|2136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_155 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.1563

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9SLG|1|a|C|2133
9SLG|1|a|U|2134
9SLG|1|a|U|2135
9SLG|1|a|U|2136
9SLG|1|a|G|2137
9SLG|1|a|A|2138
9SLG|1|a|A|2139
9SLG|1|a|G|2140
*
9SLG|1|a|U|2159
9SLG|1|a|G|2160
9SLG|1|a|G|2161
9SLG|1|a|A|2162
9SLG|1|a|G|2163

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein uL1