IL_9SLG_174

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9SLG|1|a|A|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_174 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1522

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9SLG|1|a|G|2741
9SLG|1|a|A|2742
9SLG|1|a|U|2743
9SLG|1|a|A|2744
9SLG|1|a|A|2745
9SLG|1|a|G|2746
*
9SLG|1|a|C|2766
9SLG|1|a|G|2767
9SLG|1|a|A|2768
9SLG|1|a|A|2769
9SLG|1|a|A|2770
9SLG|1|a|C|2771

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain g

Large ribosomal subunit protein uL6

Chain i

Large ribosomal subunit protein uL13