IL_9SPF_104

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|L5|U|3715
9SPF|1|L5|C|3716
9SPF|1|L5|A|3717
9SPF|1|L5|A2M|3718
9SPF|1|L5|A|3719
9SPF|1|L5|G|3720
9SPF|1|L5|U|3721
*
9SPF|1|L5|A|3732
9SPF|1|L5|A|3733
9SPF|1|L5|PSU|3734
9SPF|1|L5|G|3735
9SPF|1|L5|A|3736
9SPF|1|L5|A|3737
9SPF|1|L5|G|3738

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Et

Transfer RNA; tRNA

Chain LA

Large ribosomal subunit protein uL2

Chain Li

60S ribosomal protein L36

Chain Lo

Large ribosomal subunit protein eL42